MICROSCOPY Archives | Imagine Optic https://www.imagine-optic.com/tag/microscopy/ Wavefront Sensing, Optical Metrology & Adaptive Optics Thu, 01 Dec 2022 10:46:15 +0000 en-US hourly 1 https://wordpress.org/?v=6.8.3 https://www.imagine-optic.com/wp-content/uploads/2021/02/cropped-favicon-imagine-32x32.png MICROSCOPY Archives | Imagine Optic https://www.imagine-optic.com/tag/microscopy/ 32 32 Nuclear pore complex imaging using adaptive optics https://www.imagine-optic.com/nuclear-pore-complex-imaging-using-adaptive-optics/ Tue, 22 Feb 2022 10:58:35 +0000 https://www.imagine-optic.com/?p=263075 The group of Siegfried Musser from Texas AM University recently published an article in Nature Cell Biology where they used a MIRAO 52E deformable mirror to perform nuclear pore complex imaging using adaptive optics in super resolution. Super resolution microscopy techniques, such as PALM and STORM, open the possibility to visualize the smallest intracellular components, lying […]

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The group of Siegfried Musser from Texas AM University recently published an article in Nature Cell Biology where they used a MIRAO 52E deformable mirror to perform nuclear pore complex imaging using adaptive optics in super resolution. Super resolution microscopy techniques, such as PALM and STORM, open the possibility to visualize the smallest intracellular components, lying well beyond the diffraction limit of light and which are not otherwise accessible using conventional fluorescence microscopy methods. One of such small intracellular structures, is a nuclear pore complex (NPC). Embedded in the nucleus membrane NPCs are massive multiprotein complexes that act as passageways for the transport of molecules into and out of the nucleus. With a molecular mass of 125 MDa in vertebrates, the NPC is one of the largest and most complex protein structures of eukaryotic cells and yet is still smaller than diffraction limit.

Breaking the diffraction limit

While numerous 3D light microscopy methods have been developed over the last few decades, single-molecule astigmatism imaging provides the highest spatial localization precision in X, Y and Z, and its useful Z-range matches well to that necessary to monitor cargo trafficking through NPCs. Although the simplest approach to achieve astigmatism imaging is via a cylindrical lens, here researchers used MIRAO 52E deformable mirror both to correct sample-induced aberrations and to add a small amount of astigmatism for 3D imaging. This way they demonstrated exceptional-quality calibration curves which ensured the highest localization precision in Z.  

Nuclear pore complex imaging using adaptive optics: the Z calibration and localization precision using 60nm rms astigmatism introduced with the deformable mirror. (d) The Z dependence of spot widths in X and Y was obtained from Z-stack images (100ms/frame, 41 steps, step size 25nm) of five different 100nm beads embedded in 2% agarose, λ(ex)=647nm; ~2,500–3,500 photons per spot. (e) The difference between X and Y widths was approximately linearly dependent with Z. (f) The variation of X, Y and Z localization precision values along the Z axis. Localization precisions were defined as the standard deviation of position in X, Y and Z over 100 images of 100nm beads.

Even though here researchers decided to implement standalone adaptive optics components, the same results could be obtained using MICAO 3DSR – a plug & play adaptive optics system from Imagine Optic. This device is compatible with any inverted-frame microscope and our MICAO 3DSR offer automatically includes installation services and long-term support in order to create a hassle-free experience for our customers.

If you’re interested in finding out more about our line of Microscopy and Adaptive Optics solutions, you can reach us at sales@imagine-optic.com or through the contact form (red enveloppe on the side).

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Adaptive Optics Light-Sheet Microscopy for functional Neuroimaging https://www.imagine-optic.com/adaptive-optics-light-sheet-microscopy-for-functional-neuroimaging/ Fri, 16 Jul 2021 16:38:55 +0000 https://www.imagine-optic.com/?p=261978 Watch or rewatch the presentation given by Antoine Hubert (Imagine Optic and ESPCI) at the European Conference on Biomedical Optics (ECBO) on June 21st. Antoine presents his latest results on an Extended-Scene Shack-Hartmann wavefront sensing-based adaptive optics system for light-sheet microscopy in the drosophila brain. If you’re interested in finding out more about our line of Wavefront […]

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Watch or rewatch the presentation given by Antoine Hubert (Imagine Optic and ESPCI) at the European Conference on Biomedical Optics (ECBO) on June 21st. Antoine presents his latest results on an Extended-Scene Shack-Hartmann wavefront sensing-based adaptive optics system for light-sheet microscopy in the drosophila brain.

If you’re interested in finding out more about our line of Wavefront Sensors and Deformable Mirrors or Adative Optics solutions for Microscopy, you can reach us at sales@imagine-optic.com or through the contact form (red enveloppe on the side).

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Adaptive optics enables high-resolution, dual-view light-sheet microscopy through a tilted coverglass https://www.imagine-optic.com/adaptive-optics-enables-high-resolution-dual-view-light-sheet-microscopy-through-a-tilted-coverglass/ Mon, 05 Jul 2021 13:54:12 +0000 https://www.imagine-optic.com/?p=261945 Correction of static aberrations involved in tilted objective geometries restores the performance and full versatility of open-top light-sheet configurations. Even if many optical geometries have been proposed in light-sheet microscopy, in particular regarding the arrangement of excitation and/or emission objectives, designing a light-sheet system based on an open-top microscopy configuration is still a challenge, in particular […]

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Correction of static aberrations involved in tilted objective geometries restores the performance and full versatility of open-top light-sheet configurations. Even if many optical geometries have been proposed in light-sheet microscopy, in particular regarding the arrangement of excitation and/or emission objectives, designing a light-sheet system based on an open-top microscopy configuration is still a challenge, in particular when dual-view light-sheet is sought. Open-top configurations provide the versatility of inverted frames, but – when applied to light-sheet – requires imaging through a tilted coverglass, which dramatically degrades the quality of images due to optical aberrations.

In order to circumvent this limitation and to enable dual-view, high-resolution light-sheet imaging, a team of researchers from Max Delbrück Center for Molecular Medicine (Germany), NIH and HHMI Janelia Research Campus (USA) recently proposed the use of adaptive optics to get rid of system aberrations (full publication here). Thanks to a smart symmetrical design and division of optical paths, aberrations can be corrected in both imaging paths using a single deformable mirror and sensorless iterative algorithms.

For all adaptive optics setups based on sensorless algorithms, a key performance requirement is the linearity of the phase modulator. The proposed method benefits greatly from the almost perfect linearity of the MIRA0 52E electromagnetic deformable mirror, as well as from its high dynamic range and intrinsic achromaticity when compared to most other phase modulators. If a particular mirror shape has to be kept for long-term imaging experiments, a specific version of MIRAO is also available, providing a stable shape within a few nm for hours (see MIRAO 52es).

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REALM, aberration correction for PALM/STORM microscopy – webinar https://www.imagine-optic.com/aberration-correction-palm-storm-microscopy/ Tue, 29 Jun 2021 14:27:32 +0000 https://www.imagine-optic.com/?p=261935 The complexity of the aberration detection and correction process for PALM/STORM microscopy in biological samples has long been a limiting factor for widespread use of adaptive optics in biological imaging. The closed-loop method, though recognized as the best approach in terms of accuracy and speed, is usually difficult to implement due to the absence of a point source for direct wavefront sensing in […]

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The complexity of the aberration detection and correction process for PALM/STORM microscopy in biological samples has long been a limiting factor for widespread use of adaptive optics in biological imaging. The closed-loop method, though recognized as the best approach in terms of accuracy and speed, is usually difficult to implement due to the absence of a point source for direct wavefront sensing in biological samples, and the addition of fluorescent beads to the sample is seldom possible. Image-based iterative aberration detection algorithms can solve this problem, but its use in PALM/STORM microscopy is still a challenge. Indeed, PALM/STORM super resolution raw images are composed of single molecule detections (point sources), which appear at a different place in every acquired frame, and their intensity varies over time. This means “classical” merit functions, like maximal intensity or contrast, don’t work.  

Recent innovations are stretching these limits. A publication in Nature Communications by the group of Lukas Kapitein from Utrecht University reports successful application of a novel merit function based on a Fourier transform of raw images, which, therefore, does not depend on the intensity and location of detections in every frame. Their method, which is called REALM, allows direct use of the “blinking images” of the PALM/STORM technique and permits detection of aberrations on the fly. The authors need as little as about 300 frames to detect aberrations, apply the correction using a deformable mirror and then acquire the PALM/STORM sequence using a perfect PSF. By correcting aberrations, in particular in depth, the number of counts per frame is demonstrated to be increased by a factor of at least 4, due to the restoration of the PSF quality.

Lukas Kapitein’s group is one of the leading teams in the world studying the cytoskeleton of neurons. They use several innovative research methods to understand the mechanisms by which cells establish and maintain their precise shape and intracellular organization. Their REALM technique in particular was made possible thanks to our MicAO 3DSR adaptive optics add-on for super resolution PALM/STORM systems. The method opens the door to deep SMLM in tissue with unprecedented 3D resolution.  For even more information about the method, (re)watch the webinar organized by Imagine Optic and presented by Marijn Siemons, PhD student in Lukas’s group, (and including a live demo!).

If you’re interested in finding out more about our AO solutions for Microscopy, you can reach us at sales@imagine-optic.com or through the contact form (red enveloppe on the side).

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EPFL choses MICAO 3DSR for best axial localization in microscopy https://www.imagine-optic.com/epfl_micao/ Thu, 01 Apr 2021 08:14:14 +0000 https://www.imagine-optic.com/?p=261607 The post EPFL choses MICAO 3DSR for best axial localization in microscopy appeared first on Imagine Optic.

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MicAO 3DSR adaptive optics system has recently been installed in the laboratory of Pablo Rivera Fuentes at École Polytechnique Fédérale de Lausanne (EPFL). Pablo chose the system because it provides the best axial localization precision due to astigmatic PSF induced by its deformable mirror.

#AdaptiveOptics #microscopy #3Dmicroscopy #WavefrontRunners

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Breakthrough in wavefront sensing for microscopy https://www.imagine-optic.com/breakthrough-in-wavefront-sensing-for-microscopy/ Thu, 01 Apr 2021 07:46:19 +0000 https://www.imagine-optic.com/?p=261601 GCaMP7 labelled neurons of the live, adult drosophila brain at 45µm depth, imaged with fast, closed-loop adaptive optics (AO) on a Light-Sheet microscope, using our new direct wavefront sensing for microscopy approach – not requiring any guide star. All this has been made possible thanks to a great collaboration with ESPCI – LPEM and Neuro-PSI, through the InovAO […]

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GCaMP7 labelled neurons of the live, adult drosophila brain at 45µm depth, imaged with fast, closed-loop adaptive optics (AO) on a Light-Sheet microscope, using our new direct wavefront sensing for microscopy approach – not requiring any guide star. All this has been made possible thanks to a great collaboration with ESPCI – LPEM and Neuro-PSI, through the InovAO project (ANR-AAPG 2018 funding). More detailed science in our previous common publication here

We recently communicated the latest advances and results about this method and other implementations of our adaptive optics technology in microscopy at Focus on Microscopy, March 28-31 2021: the 5 talks we contributed to detailed how adaptive optics can boost imaging performance in Light-Sheet and Single-Molecule Localization Microscopy. 

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Z-range extension with complex PSF in 3D SMLM using Adaptive Optics https://www.imagine-optic.com/tetrapod-psf/ Thu, 03 Dec 2020 09:48:51 +0000 https://www.imagine-optic.com/?p=12360 Photoactivation localization microscopy (PALM) and stochastic optical reconstruction microscopy (STORM) enable localization of fluorescent molecules with nanometric resolution. In these super resolution microscopy methods the positions of molecules are obtained by fitting the shape of point spread function (PSF). Unfortunately, the PSF is symmetrical along Z axis, thus it does not provide the 3D information. […]

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Photoactivation localization microscopy (PALM) and stochastic optical reconstruction microscopy (STORM) enable localization of fluorescent molecules with nanometric resolution. In these super resolution microscopy methods the positions of molecules are obtained by fitting the shape of point spread function (PSF). Unfortunately, the PSF is symmetrical along Z axis, thus it does not provide the 3D information. In order to retrieve Z localization, the axial symmetry of the PSF has to be broken, typically using a PSF shaping technique.

The first and still the most popular PSF shaping method is to add astigmatism to the PSF using a cylindrical lens. This way the PSF extends in one direction above the focus and in the opposite direction below the focus, the amplitude of the extension being proportional to depth. The typical Z range provided by this method is reaching 1µm and localization precision up to 50nm. Practically, system and sample induced aberrations severely distort the PSF generated by a cylindrical lens, the amplitude of its extension being no longer symmetrical along Z. Using Adaptive Optics enables to compensate for aberrations, thus restoring Z localization precision, in particular in depth. Moreover, adaptive optics enables adding a controlled amount of perfect astigmatism, “cleaner” than by cylindrical lens. To this aim, our MicAO 3DSR add-on for SMLM microscopes is the perfect tool to easily optimize 3D localization precision and improve the axial resolution down to 20nm.

Sometimes 1µm axial range is not enough for observing the whole cellular structure in one acquisition process. Alternative PSF shaping methods can generate unique PSF shapes over an extended axial range. Among these methods, Tetrapod PSF – formed by a superposition of lower and higher order astigmatisms – provides an efficient combination of Z range extension, typically between 3 and 5µm, and localization precision. Tetrapod PSFs can be easily generated using a deformable mirror inside MicAO 3DSR. This capability makes MicAO 3DSR an extremely versatile tool to optimize PSF shaping in SLMLM, and to generate various PSF shapes depending on the need in terms of localization performance.

If you’re interested in finding out more about our line of Wavefront Sensors and Deformable Mirrors or AO solutions for Microscopy, you can reach us at sales@imagine-optic.com or through the contact form (red enveloppe on the side).

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(Re)Watch Webinar for Microscopy #2 – Adaptive Optics in SMLM for deep tissue imaging https://www.imagine-optic.com/rewatch-webinar-microscopy-2/ Tue, 24 Nov 2020 17:14:58 +0000 https://www.imagine-optic.com/?p=12353 Watch or rewatch “Adaptive Optics in SMLM for deep tissue imaging”, our 2nd Webinar on Microscopy. Marijn Siemons from Utrecht University presents: – An introduction to SMLM and characterization of MICAO 3DSR device, – Depth-induced ellipticity loss in 3D SMLM – And finally, Adaptive Optics for SMLM in complex tissues. If you’re interested in finding […]

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Watch or rewatch “Adaptive Optics in SMLM for deep tissue imaging”, our 2nd Webinar on Microscopy.

Marijn Siemons from Utrecht University presents:
– An introduction to SMLM and characterization of MICAO 3DSR device,
– Depth-induced ellipticity loss in 3D SMLM
– And finally, Adaptive Optics for SMLM in complex tissues.

If you’re interested in finding out more about our  AO solutions for Microscopy, you can reach us at sales@imagine-optic.com or through the contact form (red enveloppe on the side).

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New generation phase sensing and imaging: the MaxPhase project https://www.imagine-optic.com/maxphase-project/ Tue, 24 Nov 2020 17:08:33 +0000 https://www.imagine-optic.com/?p=12350 Newly funded MaxPhase project will enable high-resolution, multiplexed phase sensing for metrology, laser characterization and non-invasive cell imaging. Phase measurement has been well established for decades as a valuable method in optical metrology and adaptive optics, in particular through the use of wavefront sensors or interferometers. However, new needs are now emerging that require tailored […]

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Newly funded MaxPhase project will enable high-resolution, multiplexed phase sensing for metrology, laser characterization and non-invasive cell imaging.

Phase measurement has been well established for decades as a valuable method in optical metrology and adaptive optics, in particular through the use of wavefront sensors or interferometers. However, new needs are now emerging that require tailored phase measurement capabilities. In particular, advances in optical manufacturing technologies have enabled the launch of components based on complex designs such as metasurfaces, micro-optics arrays, or diffractive optical elements, requiring advanced metrology tools. High-energy, ultrafast lasers need careful characterization and optimization of spatio-spectral coupling effects. Cell imaging now requires non-invasive methods to assess cellular parameters over long periods, ideally in 3D.

These needs benefit from phase imaging, either through the use of wavefront sensors for optical metrology or laser characterization, or through the use of quantitative phase imaging systems. However, current technologies do not yet provide the necessary combination of resolution, sensitivity, speed, versatility and cost-effectiveness.

The MaxPhase project was recently awarded funding by the French National Research Agency (ANR). It will gather a consortium of academic and industrial experts with the aim to develop new phase sensing approaches, tackling current technological limits in the field. Imagine Optic is proud to participate in this collective effort, which has the potential to open doors for future innovative products allowing ultrafast laser characterization and quantitative phase imaging & tomography. The MaxPhase project has received funding under the ANR-AAPG 2020 call.

If you’re interested in finding out more about our line of Wavefront Sensors and Optical Metrology Systems and adaptive optics you can reach us at sales@imagine-optic.com or through the contact form (red enveloppe on the side).

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Adaptive Optics for Lattice Light Sheet microscopy – BIPSA 2020 https://www.imagine-optic.com/bipsa-2020/ Mon, 09 Nov 2020 12:01:46 +0000 https://www.imagine-optic.com/?p=12323 The 2020 edition of BIPSA conference (Excellence Network in Bioimaging and Health in Nouvelle Aquitaine) will be held November 9-10th as part of the ViV HEALTECH forum. This full day of conference will be dedicated to biological imaging in the morning and to medical imaging in the afternoon, and will be accessible via visioconference. As […]

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The 2020 edition of BIPSA conference (Excellence Network in Bioimaging and Health in Nouvelle Aquitaine) will be held November 9-10th as part of the ViV HEALTECH forum. This full day of conference will be dedicated to biological imaging in the morning and to medical imaging in the afternoon, and will be accessible via visioconference.

As part of the fruitful collaboration with the Bordeaux Imaging Center (BIC), Imagine Optic will make a presentation of recent results obtained in Adaptive Optics applied to Lattice Light-Sheet microscopy, scheduled 10:40 CET on Tuesday the 10th.

We will demonstrate how the use of our MirAO 52e deformable mirror in combination with iterative image-based algorithms provides significant improvement in terms of image quality, in depth, of biological samples. The resulting Adaptive Optics Lattice Light-Sheet microscope provides ultra-high spatio-temporal resolution with low phototoxicity up to about 50µm.

If you’re interested in finding out more about our line of Wavefront Sensors and Deformable Mirrors or AO solutions for Microscopy, you can reach us at sales@imagine-optic.com or through the contact form (red enveloppe on the side).

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